taxid	scientific_name	compartment	genetic_code	source	cds	html_path	txt_path	tsv_path	json_path	release	data_status
562	Escherichia coli	nuclear	1	All	1115	/taxon/562/nuclear-code1/All.html	/taxon/562/nuclear-code1/All.txt	/taxon/562/nuclear-code1/All.tsv	/taxon/562/nuclear-code1/All.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
562	Escherichia coli	nuclear	1	TRA	1115	/taxon/562/nuclear-code1/TRA.html	/taxon/562/nuclear-code1/TRA.txt	/taxon/562/nuclear-code1/TRA.tsv	/taxon/562/nuclear-code1/TRA.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
562	Escherichia coli	nuclear	11	All	20088704	/taxon/562/nuclear-code11/All.html	/taxon/562/nuclear-code11/All.txt	/taxon/562/nuclear-code11/All.tsv	/taxon/562/nuclear-code11/All.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
562	Escherichia coli	nuclear	11	RefSeq	9056195	/taxon/562/nuclear-code11/RefSeq.html	/taxon/562/nuclear-code11/RefSeq.txt	/taxon/562/nuclear-code11/RefSeq.tsv	/taxon/562/nuclear-code11/RefSeq.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
562	Escherichia coli	nuclear	11	TRA	2298706	/taxon/562/nuclear-code11/TRA.html	/taxon/562/nuclear-code11/TRA.txt	/taxon/562/nuclear-code11/TRA.tsv	/taxon/562/nuclear-code11/TRA.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
562	Escherichia coli	nuclear	11	WGS	16042460	/taxon/562/nuclear-code11/WGS.html	/taxon/562/nuclear-code11/WGS.txt	/taxon/562/nuclear-code11/WGS.tsv	/taxon/562/nuclear-code11/WGS.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
4932	Saccharomyces cerevisiae	nuclear	1	All	479471	/taxon/4932/nuclear-code1/All.html	/taxon/4932/nuclear-code1/All.txt	/taxon/4932/nuclear-code1/All.tsv	/taxon/4932/nuclear-code1/All.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
4932	Saccharomyces cerevisiae	nuclear	1	TRA	53767	/taxon/4932/nuclear-code1/TRA.html	/taxon/4932/nuclear-code1/TRA.txt	/taxon/4932/nuclear-code1/TRA.tsv	/taxon/4932/nuclear-code1/TRA.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
4932	Saccharomyces cerevisiae	nuclear	1	WGS	460884	/taxon/4932/nuclear-code1/WGS.html	/taxon/4932/nuclear-code1/WGS.txt	/taxon/4932/nuclear-code1/WGS.tsv	/taxon/4932/nuclear-code1/WGS.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
4932	Saccharomyces cerevisiae	mitochondrion	3	All	473	/taxon/4932/mitochondrion-code3/All.html	/taxon/4932/mitochondrion-code3/All.txt	/taxon/4932/mitochondrion-code3/All.tsv	/taxon/4932/mitochondrion-code3/All.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
4932	Saccharomyces cerevisiae	mitochondrion	3	RefSeq	8	/taxon/4932/mitochondrion-code3/RefSeq.html	/taxon/4932/mitochondrion-code3/RefSeq.txt	/taxon/4932/mitochondrion-code3/RefSeq.tsv	/taxon/4932/mitochondrion-code3/RefSeq.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
4932	Saccharomyces cerevisiae	mitochondrion	3	TRA	455	/taxon/4932/mitochondrion-code3/TRA.html	/taxon/4932/mitochondrion-code3/TRA.txt	/taxon/4932/mitochondrion-code3/TRA.tsv	/taxon/4932/mitochondrion-code3/TRA.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
4932	Saccharomyces cerevisiae	mitochondrion	3	WGS	37	/taxon/4932/mitochondrion-code3/WGS.html	/taxon/4932/mitochondrion-code3/WGS.txt	/taxon/4932/mitochondrion-code3/WGS.tsv	/taxon/4932/mitochondrion-code3/WGS.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
9606	Homo sapiens	nuclear	1	All	267253	/taxon/9606/nuclear-code1/All.html	/taxon/9606/nuclear-code1/All.txt	/taxon/9606/nuclear-code1/All.tsv	/taxon/9606/nuclear-code1/All.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
9606	Homo sapiens	nuclear	1	RefSeq	119377	/taxon/9606/nuclear-code1/RefSeq.html	/taxon/9606/nuclear-code1/RefSeq.txt	/taxon/9606/nuclear-code1/RefSeq.tsv	/taxon/9606/nuclear-code1/RefSeq.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
9606	Homo sapiens	nuclear	1	TRA	170886	/taxon/9606/nuclear-code1/TRA.html	/taxon/9606/nuclear-code1/TRA.txt	/taxon/9606/nuclear-code1/TRA.tsv	/taxon/9606/nuclear-code1/TRA.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
9606	Homo sapiens	nuclear	1	WGS	54319	/taxon/9606/nuclear-code1/WGS.html	/taxon/9606/nuclear-code1/WGS.txt	/taxon/9606/nuclear-code1/WGS.tsv	/taxon/9606/nuclear-code1/WGS.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
9606	Homo sapiens	mitochondrion	2	All	17470	/taxon/9606/mitochondrion-code2/All.html	/taxon/9606/mitochondrion-code2/All.txt	/taxon/9606/mitochondrion-code2/All.tsv	/taxon/9606/mitochondrion-code2/All.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
9606	Homo sapiens	mitochondrion	2	RefSeq	7	/taxon/9606/mitochondrion-code2/RefSeq.html	/taxon/9606/mitochondrion-code2/RefSeq.txt	/taxon/9606/mitochondrion-code2/RefSeq.tsv	/taxon/9606/mitochondrion-code2/RefSeq.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
9606	Homo sapiens	mitochondrion	2	TRA	17470	/taxon/9606/mitochondrion-code2/TRA.html	/taxon/9606/mitochondrion-code2/TRA.txt	/taxon/9606/mitochondrion-code2/TRA.tsv	/taxon/9606/mitochondrion-code2/TRA.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
9606	Homo sapiens	mitochondrion	2	WGS	9	/taxon/9606/mitochondrion-code2/WGS.html	/taxon/9606/mitochondrion-code2/WGS.txt	/taxon/9606/mitochondrion-code2/WGS.tsv	/taxon/9606/mitochondrion-code2/WGS.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
9606	Homo sapiens	nuclear	11	All	4	/taxon/9606/nuclear-code11/All.html	/taxon/9606/nuclear-code11/All.txt	/taxon/9606/nuclear-code11/All.tsv	/taxon/9606/nuclear-code11/All.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
9606	Homo sapiens	nuclear	11	TRA	4	/taxon/9606/nuclear-code11/TRA.html	/taxon/9606/nuclear-code11/TRA.txt	/taxon/9606/nuclear-code11/TRA.tsv	/taxon/9606/nuclear-code11/TRA.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
9685	Felis catus	nuclear	1	All	55206	/taxon/9685/nuclear-code1/All.html	/taxon/9685/nuclear-code1/All.txt	/taxon/9685/nuclear-code1/All.tsv	/taxon/9685/nuclear-code1/All.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
9685	Felis catus	nuclear	1	RefSeq	54464	/taxon/9685/nuclear-code1/RefSeq.html	/taxon/9685/nuclear-code1/RefSeq.txt	/taxon/9685/nuclear-code1/RefSeq.tsv	/taxon/9685/nuclear-code1/RefSeq.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
9685	Felis catus	nuclear	1	TRA	871	/taxon/9685/nuclear-code1/TRA.html	/taxon/9685/nuclear-code1/TRA.txt	/taxon/9685/nuclear-code1/TRA.tsv	/taxon/9685/nuclear-code1/TRA.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
9685	Felis catus	mitochondrion	2	All	174	/taxon/9685/mitochondrion-code2/All.html	/taxon/9685/mitochondrion-code2/All.txt	/taxon/9685/mitochondrion-code2/All.tsv	/taxon/9685/mitochondrion-code2/All.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
9685	Felis catus	mitochondrion	2	RefSeq	8	/taxon/9685/mitochondrion-code2/RefSeq.html	/taxon/9685/mitochondrion-code2/RefSeq.txt	/taxon/9685/mitochondrion-code2/RefSeq.tsv	/taxon/9685/mitochondrion-code2/RefSeq.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
9685	Felis catus	mitochondrion	2	TRA	174	/taxon/9685/mitochondrion-code2/TRA.html	/taxon/9685/mitochondrion-code2/TRA.txt	/taxon/9685/mitochondrion-code2/TRA.tsv	/taxon/9685/mitochondrion-code2/TRA.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
11320	Influenza A virus	nuclear	1	All	388333	/taxon/11320/nuclear-code1/All.html	/taxon/11320/nuclear-code1/All.txt	/taxon/11320/nuclear-code1/All.tsv	/taxon/11320/nuclear-code1/All.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
11320	Influenza A virus	nuclear	1	TRA	388333	/taxon/11320/nuclear-code1/TRA.html	/taxon/11320/nuclear-code1/TRA.txt	/taxon/11320/nuclear-code1/TRA.tsv	/taxon/11320/nuclear-code1/TRA.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
2697049	Severe acute respiratory syndrome coronavirus 2	nuclear	1	All	2358509	/taxon/2697049/nuclear-code1/All.html	/taxon/2697049/nuclear-code1/All.txt	/taxon/2697049/nuclear-code1/All.tsv	/taxon/2697049/nuclear-code1/All.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
2697049	Severe acute respiratory syndrome coronavirus 2	nuclear	1	RefSeq	12	/taxon/2697049/nuclear-code1/RefSeq.html	/taxon/2697049/nuclear-code1/RefSeq.txt	/taxon/2697049/nuclear-code1/RefSeq.tsv	/taxon/2697049/nuclear-code1/RefSeq.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
2697049	Severe acute respiratory syndrome coronavirus 2	nuclear	1	TRA	2358509	/taxon/2697049/nuclear-code1/TRA.html	/taxon/2697049/nuclear-code1/TRA.txt	/taxon/2697049/nuclear-code1/TRA.tsv	/taxon/2697049/nuclear-code1/TRA.json	historical-exploratory	Exploratory analysis; not a formal CUTD Release V1.0.0
83333	Escherichia coli K-12	nuclear	11	All	27653	/taxon/83333/nuclear-code11/All.html	/taxon/83333/nuclear-code11/All.txt	/taxon/83333/nuclear-code11/All.tsv	/taxon/83333/nuclear-code11/All.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
83333	Escherichia coli K-12	nuclear	11	TRA	6654	/taxon/83333/nuclear-code11/TRA.html	/taxon/83333/nuclear-code11/TRA.txt	/taxon/83333/nuclear-code11/TRA.tsv	/taxon/83333/nuclear-code11/TRA.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
83333	Escherichia coli K-12	nuclear	11	WGS	21291	/taxon/83333/nuclear-code11/WGS.html	/taxon/83333/nuclear-code11/WGS.txt	/taxon/83333/nuclear-code11/WGS.tsv	/taxon/83333/nuclear-code11/WGS.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
83333	Escherichia coli K-12	nuclear	11	RefSeq	24579	/taxon/83333/nuclear-code11/RefSeq.html	/taxon/83333/nuclear-code11/RefSeq.txt	/taxon/83333/nuclear-code11/RefSeq.tsv	/taxon/83333/nuclear-code11/RefSeq.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
1423	Bacillus subtilis	nuclear	11	All	854924	/taxon/1423/nuclear-code11/All.html	/taxon/1423/nuclear-code11/All.txt	/taxon/1423/nuclear-code11/All.tsv	/taxon/1423/nuclear-code11/All.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
1423	Bacillus subtilis	nuclear	11	TRA	322349	/taxon/1423/nuclear-code11/TRA.html	/taxon/1423/nuclear-code11/TRA.txt	/taxon/1423/nuclear-code11/TRA.tsv	/taxon/1423/nuclear-code11/TRA.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
1423	Bacillus subtilis	nuclear	11	WGS	673797	/taxon/1423/nuclear-code11/WGS.html	/taxon/1423/nuclear-code11/WGS.txt	/taxon/1423/nuclear-code11/WGS.tsv	/taxon/1423/nuclear-code11/WGS.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
1423	Bacillus subtilis	nuclear	11	RefSeq	546900	/taxon/1423/nuclear-code11/RefSeq.html	/taxon/1423/nuclear-code11/RefSeq.txt	/taxon/1423/nuclear-code11/RefSeq.tsv	/taxon/1423/nuclear-code11/RefSeq.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
2097	Mycoplasma genitalium	nuclear	4	All	4094	/taxon/2097/nuclear-code4/All.html	/taxon/2097/nuclear-code4/All.txt	/taxon/2097/nuclear-code4/All.tsv	/taxon/2097/nuclear-code4/All.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
2097	Mycoplasma genitalium	nuclear	4	TRA	933	/taxon/2097/nuclear-code4/TRA.html	/taxon/2097/nuclear-code4/TRA.txt	/taxon/2097/nuclear-code4/TRA.tsv	/taxon/2097/nuclear-code4/TRA.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
2097	Mycoplasma genitalium	nuclear	4	WGS	3821	/taxon/2097/nuclear-code4/WGS.html	/taxon/2097/nuclear-code4/WGS.txt	/taxon/2097/nuclear-code4/WGS.tsv	/taxon/2097/nuclear-code4/WGS.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0
2097	Mycoplasma genitalium	nuclear	4	RefSeq	3969	/taxon/2097/nuclear-code4/RefSeq.html	/taxon/2097/nuclear-code4/RefSeq.txt	/taxon/2097/nuclear-code4/RefSeq.tsv	/taxon/2097/nuclear-code4/RefSeq.json	raw-cds-v3-20261024-analysis-20261103	Exploratory analysis; not a formal CUTD Release V1.0.0